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Plot interspecific correlations

plot_correlations.Rd

Plot pairwise species correlations for different model components.For occupancy, interspecific correlations are only estimated for responses to site-level predictors. For detection, interspecific correlations are potentially estimated for responses to site-level predictors, survey-level predictors, random site effects, random survey effects, and potentially Poisson OLREs.

Usage

plot_correlations(
  fit,
  submodel = c("detection", "occupancy"),
  species = NULL,
  ...
)

Arguments

fit

A fitted model object from fit_model().

submodel

character. Correlations of submodel to plot. One of "detection" (default) or "occupancy".

species

character. Vector of species to plot. If NULL (default), all species are plotted. Must be one of attr(occARU_data, "species").

...

Additional arguments passed to ggdist::stat_pointinterval().

Value

A ggplot object with occARU-specific attributes attached:

plot_data

The tibble used to produce the plot.

See also

fit_model(), plot_intercepts(), plot_coefficients(), plot_sites(), plot_surveys(), plot_partitions(), plot_realised()