Package index • occARU

Core Functions

make_data(): Prepare data for the occARU model
fit_model(): Fit the occARU model
set_priors(): Set priors for the occARU model

Plotting

plot_intercepts(): Plot intercepts
plot_coefficients(): Plot predictor coefficients
plot_correlations(): Plot interspecific correlations
plot_sites(): Plot site occupancy and detection rates
plot_surveys(): Plot temporal detection rates
plot_partitions(): Plot variance partitions
plot_realised(): Plot realised occupancy proportions

Helpers

setup_occARU(): Set up CmdStan for use with occARU
thin_observations(): Thin observations
find_failures(): Find potential ARU failure periods