Package index

Core Functions

make_data()

Prepare data for the occARU model

occARU()

Fit the occARU model

set_priors()

Set priors for the occARU model

Plotting

Data

plot_deployments()

Plot deployment dates

plot_observations()

Plot observations

Fitted Object

plot_intercepts()

Plot intercepts

plot_coefficients()

Plot predictor coefficients

plot_correlations()

Plot interspecific correlations

plot_sites()

Plot site occupancy and detection rates

plot_surveys()

Plot temporal detection rates

plot_partitions()

Plot variance partitions

plot_realised()

Plot realised occupancy proportions

pp_check(<occARU_fit>)

Posterior predictive checks using rootograms for occARU_fit objects

Helpers

setup_occARU()

Set up CmdStan for use with occARU

thin_observations()

Thin observations

find_failures()

Find potential ARU failure periods

find_seasons()

Find seasons of deployments