Plot realised occupancy proportions

Plots species-level proportions of occupied sites by season, \(\frac{\sum_{i = 1}^I z_{kis}}{I}\), potentially by region.

Usage

plot_realised(
  fit,
  by_region = FALSE,
  species = NULL,
  sites = NULL,
  regions = NULL,
  seasons = NULL,
  ...
)

Arguments

fit

A fitted model object from occARU().

by_region

logical. Whether to plot by region, if multiple regions were included.

species

character. Vector of species to plot. If NULL (default), all species are plotted. Must be one of attr(occARU_data, "species").

sites

character. Vector of sites to use. If NULL (default), all sites are used. Must be one of attr(occARU_data, "sites").

regions

character. Vector of regions to use. If NULL (default), all regions are used. Must be one of attr(occARU_data, "regions").

seasons

character. Vector of seasons to use. If NULL (default), all seasons are used. Must be one of attr(occARU_data, "seasons").

...

Additional arguments passed to ggdist::stat_pointinterval().

Value

A ggplot object with occARU-specific attributes attached:

plot_data

The tibble used to produce the plot.

See also

occARU(), plot_intercepts(), plot_coefficients(), plot_sites(), plot_surveys(), plot_correlations(), plot_partitions()